These six protein bagel recipes are high in protein, easy to make, and tested in real kitchens, approved by both parents and kids for taste and texture. Each one uses simple, whole food ingredients like cottage cheese and Greek yogurt to create chewy, satisfying bagels that keep you full for hours.
Some mornings feel like chaos, coffee going cold, kids calling for breakfast, and a million things on your mind. That’s when these recipes shine. No powders, no fuss, just real flavor, family-approved results, and breakfasts that work in real life.
Table of Contents
Cottage Cheese Bagels: The 3-Ingredient Powerhouse
This is the recipe that started it all for me. Just cottage cheese, self-rising flour, and baking powder create a soft, chewy bagel that hits 30g of protein. No yeast. No boiling. Just mix, shape, and bake.
How I serve it:
Topped with almond butter for a quick breakfast, or sliced for a turkey and avocado sandwich. I bake them almost every week, and they freeze perfectly.
Get the recipe: Cottage Cheese Bagels
Pair it with: Blueberry Protein Muffins for a full breakfast that’s light, balanced, and family-approved.
Wondering why protein is such a game-changer at breakfast? According to Healthline, higher protein intake may support weight loss, energy, and muscle health, especially when it comes from whole food sources like eggs, yogurt, and whole grains.
Cinnamon Raisin Bagels: Sweet, Spiced, and Satisfying
These are for the mornings that need a little comfort. Packed with warm cinnamon, chewy organic raisins, and a touch of coconut sugar, they bring cozy bakery vibes right into your home. Each bite delivers protein, fiber, and that nostalgic sweetness I used to find in bakery windows. I love these paired with plain Greek yogurt or almond butter.
Try this one next: Cinnamon Raisin Bagel
Pair it with: Healthy Multigrain Bagel or revisit Are Protein Bagels Healthy? if you’re craving a cozy, high-protein combo that’s easy on prep.
Blueberry Protein Bagels: Lightly Sweet and Meal-Prep Friendly
Blueberries in a bagel? Yes, and they work beautifully. These are made with cottage cheese dough and folded with freeze-dried blueberries that hold up better in baking than fresh ones. They’re slightly sweet, great for meal prep, and totally satisfying. I love having a batch ready for after-school snacks or paired with a warm drink on busy mornings.
Bake them this week: Blueberry Protein Bagels
Pair it with: A scoop of Greek yogurt or a Banana Protein Muffin for an energizing snack.
Onion Bagels: Bold Flavor Meets Soft Texture
This one’s for the savory lover in your house (Dan, I’m looking at you). These bagels are baked with minced onion right into the dough, giving you that rich flavor without being overpowering. Each one has over 28g of protein and is perfect for slicing, toasting, and layering with scrambled eggs or herbed cream cheese.
Get the full recipe: Onion Bagel
Pair it with: Everything Bagel and sliced avocado for a protein-packed, savory breakfast board.
Everything Bagel: Classic, Crunchy, and Customizable
If I had to choose one bagel to make every single week, this would be it. I use the same simple cottage cheese base, but this time it’s coated in everything seasoning, garlic, sesame, onion, and poppy seeds that crisp up in the oven. It’s the kind of bagel that works hard all day, whether you’re layering it with creamy avocado at breakfast or pairing it with my kale and white bean salad for lunch.
Find it here: Everything Bagel
Pair it with: My Kale and White Bean Salad or Banana Muffins for a sweet-savory brunch spread.
Protein Bagels (Base Recipe): Where It All Begins
This base dough uses just three ingredients, self-rising flour, cottage cheese, and salt, and can be shaped into any flavor you want. Sweet, savory, seeded, or stuffed. I use it for everything from bagel bites to pizza bagels. It’s flexible, reliable, and packed with protein (up to 30g per serving).
Start here: Protein Bagel Base Recipe
Pair it with: Protein Muffins for a post-workout plate that’s easy to prep and hard to beat.
Nutrition & Health Benefits
| Bagel Type | Protein (g) | Carbs (g) | Fiber (g) | Calories |
|---|---|---|---|---|
| Plain Store-Bought | 9 | 55 | 2 | 270 |
| Cottage Cheese Bagel | 30 | 35 | 3 | 280 |
| Onion Bagel | 28 | 36 | 3 | 285 |
| Everything Bagel | 27 | 34 | 3 | 275 |
High-protein breakfasts, especially from whole food sources, can help with weight management, sustained energy, and muscle recovery (Mayo Clinic).
Storage & Meal Prep Tips
- Fridge: Store in an airtight container for up to 4 days.
- Freezer: Slice before freezing; toast straight from frozen.
- Batch Prep: Double the recipe and freeze half for easy mornings.
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Your Frequently Asked Questions Answered
1. Are protein bagels actually healthy?
Yes, especially when made with whole food ingredients like cottage cheese or Greek yogurt. They offer balanced macros for steady energy. My Cottage Cheese Bagels are a perfect example, keeping you full longer than traditional bagels while still tasting indulgent.
2. What’s the best protein source for homemade bagels?
Cottage cheese and Greek yogurt are my favorites, they boost protein, improve texture, and add moisture. The Protein Bagel Base Recipe uses these ingredients to create both sweet and savory variations that are soft, chewy, and nutrient-rich.
3. Do protein bagels need yeast?
No. Quick versions, like Cottage Cheese Bagels, use baking powder for a fast rise, while yeast recipes such as Cinnamon Raisin Bagels provide a traditional bakery chew and deeper flavor.
4. How many grams of protein are in a homemade protein bagel?
Most of my recipes provide 21–30g per serving. For a full breakdown, see my Are Protein Bagels Healthy? guide, where I compare macros for each recipe, helping you choose the best fit for your nutrition goals.
5. Can I freeze protein bagels?
Yes, slice before freezing so you can toast straight from frozen. This works for all varieties, from Everything Bagels to Onion Bagels, making it easy to keep high-protein options on hand anytime.
Final Thoughts
If you’ve made it this far, you’re probably ready to roll up your sleeves and bake. Whether it’s the cozy sweetness of a cinnamon raisin bagel or the bold crunch of everything seasoning, there’s a protein bagel here that fits your pace, your cravings, and your real life.
They’re not just high in protein. They’re high in satisfaction, flexibility, and connection, because every one of these was tested, approved, and built to make you feel like you’ve got this.
Need something sweet to go with it? Don’t miss my Protein Muffin Recipe, just five ingredients and ready in under 25 minutes.
Have questions or want a topping guide? Head over to my list of the best bagel toppings for easy flavor combos.
You belong in the kitchen, not for perfection, but for joy. Let’s bake something worth sharing.