6 Protein Bagel Recipes: High-Protein, Easy, and Family-Tested

If you’ve ever danced around a kitchen with a toddler on your hip and a to-do list in your head, then you already know why I started making these bagels. I was juggling the chaos of work, motherhood, and a brain that couldn’t handle one more crash-and-burn breakfast. That’s when I ditched the store-bought carbs and started baking my own high-protein bagels, real food that could keep up with real life. Today, these six protein bagel recipes aren’t just fuel; they’re how I feed my family with care and flavor in every bite. And yes, they’re all tested and approved.

Table of Contents

Cottage Cheese Bagels: The 3-Ingredient Powerhouse

High-protein cottage cheese bagel sliced and served

These are the bagels that started it all. Three ingredients, cottage cheese, flour, and baking powder, create a soft, chewy bagel that hits 30g of protein per serving. No yeast. No boiling. Just mix, shape, and bake. Top with almond butter or turn them into a sandwich with turkey and avocado. I make them almost every week, and they freeze easily.

Get the recipe: Cottage Cheese Bagels


Pair it with: Blueberry Protein Muffins for a full breakfast that’s light, balanced, and family-approved.

Wondering why protein is such a game-changer at breakfast? According to Healthline, higher protein intake may support weight loss, energy, and muscle health, especially when it comes from whole food sources like eggs, yogurt, and whole grains.


Cinnamon Raisin Bagels: Sweet, Spiced, and Satisfying

Homemade cinnamon raisin protein bagel

These are for the mornings that need a little comfort. Packed with warm cinnamon, chewy organic raisins, and a touch of coconut sugar, they bring cozy bakery vibes right into your home. Each bite delivers protein, fiber, and that nostalgic sweetness I used to find in bakery windows. I love these paired with plain Greek yogurt or almond butter.

Try this one next: Cinnamon Raisin Bagel


Pair it with: Protein Muffins if you’re craving a cozy, high-protein combo that’s easy on prep.


Blueberry Protein Bagels: Lightly Sweet and Meal-Prep Friendly

Stack of blueberry protein bagels with visible berries

Blueberries in a bagel? Yes, and they work beautifully. These are made with cottage cheese dough and folded with freeze-dried blueberries that hold up better in baking than fresh ones. They’re slightly sweet, great for meal prep, and totally satisfying. I love having a batch ready for after-school snacks or paired with a warm drink on busy mornings.

Bake them this week: Blueberry Protein Bagels


Pair it with: A scoop of Greek yogurt or a Banana Protein Muffin for an energizing snack.


Onion Bagels: Bold Flavor Meets Soft Texture

High-protein onion bagel

This one’s for the savory lover in your house (Dan, I’m looking at you). These bagels are baked with minced onion right into the dough, giving you that rich flavor without being overpowering. Each one has over 28g of protein and is perfect for slicing, toasting, and layering with scrambled eggs or herbed cream cheese.

Get the full recipe: Onion Bagel

Pair it with: Everything Bagel and sliced avocado for a protein-packed, savory breakfast board.


Everything Bagel: Classic, Crunchy, and Customizable

Everything protein bagel

If I had to choose one bagel to make every single week, this would be it. I use the same simple cottage cheese base, but this time it’s coated in everything seasoning, garlic, sesame, onion, and poppy seeds that crisp up in the oven. It’s the kind of bagel that works hard all day, whether you’re layering it with creamy avocado at breakfast or pairing it with my kale and white bean salad for lunch.

Find it here: Everything Bagel

Pair it with: My Kale and White Bean Salad or Banana Muffins for a sweet-savory brunch spread.


Protein Bagels (Base Recipe): Where It All Begins

Freshly baked plain protein bagel on cooling rack

This base dough uses just three ingredients, self-rising flour, cottage cheese, and salt, and can be shaped into any flavor you want. Sweet, savory, seeded, or stuffed. I use it for everything from bagel bites to pizza bagels. It’s flexible, reliable, and packed with protein (up to 30g per serving).

Start here: Protein Bagel Base Recipe

Pair it with: Protein Muffins for a post-workout plate that’s easy to prep and hard to beat.

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Frequently Asked Questions

1. Are protein bagels actually healthy?

Yes, protein bagels can be a healthy choice, especially when made at home. They’re typically lower in refined carbs and higher in protein, making them more filling and balanced than traditional bagels.

2. What’s the best protein source for homemade bagels?

In my kitchen, cottage cheese and Greek yogurt are two go-to ingredients, they pack protein, add moisture, and help create that soft, satisfying texture we all love in a homemade bagel.

3. Do protein bagels need yeast?

Not always. Some recipes, like my cottage cheese bagels, are yeast-free and use baking powder instead. Others, like cinnamon raisin, do use yeast for that classic chewy texture.

4. How many grams of protein are in a homemade protein bagel?

It depends on the ingredients, but most of my recipes range from 21g to 30g of protein per bagel, thanks to high-protein flours and dairy.

5. Can I freeze protein bagels?

Yes, all of these bagels freeze beautifully. Just slice them first and store in an airtight container or freezer bag. Toast straight from frozen for best results.

Final Thoughts

If you’ve made it this far, you’re probably ready to roll up your sleeves and bake. Whether it’s the cozy sweetness of a cinnamon raisin bagel or the bold crunch of everything seasoning, there’s a protein bagel here that fits your pace, your cravings, and your real life.

They’re not just high in protein. They’re high in satisfaction, flexibility, and connection, because every one of these was tested, approved, and built to make you feel like you’ve got this.

Need something sweet to go with it? Don’t miss my Protein Muffin Recipe, just five ingredients and ready in under 25 minutes.
Have questions or want a topping guide? Head over to my list of the best bagel toppings for easy flavor combos.

You belong in the kitchen, not for perfection, but for joy. Let’s bake something worth sharing.

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